Jobs › Tempus AI

Bioinformatics Engineer II

Tempus AI · CA · Remote available · $90,000–$140,000 a year · Full time

Posted Aug 20, 2026 · We last checked this listing on Oct 6, 2026

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Likely interview questions for this role

Written from this job description, not a generic list. Each one notes what the interviewer is really checking.

About your past

How do you estimate how long a ticket will take, and what do you do when your estimate is wrong?

What they are checking: Whether they plan honestly and raise slips early, as the posting asks them to flag blockers.

Tell me about a time you mentored a junior engineer.

What they are checking: Whether they can teach and set standards, which the posting describes as part of the role.

What do you like about working where software meets biology?

What they are checking: Whether they understand and enjoy the domain, which helps when requirements are scientific.

What would you do

A production job fails overnight and the logs are unclear. How do you troubleshoot it?

What they are checking: Whether they work methodically through logs, inputs and recent changes instead of guessing.

A stakeholder's requirements are vague. How do you get to a clear spec before you start coding?

What they are checking: Whether they ask the right questions so they build the right thing the first time.

About the work

Walk me through how you would design a pipeline that processes sequencing data from raw files to final results.

What they are checking: Whether they can think through steps, tools, failure points and logging in an end-to-end process.

Write or describe a SQL query to find samples that failed QC in the last thirty days, grouped by run.

What they are checking: Whether they are comfortable with relational databases and can write practical queries quickly.

What makes a good code review comment?

What they are checking: Whether they give clear, kind and specific feedback that helps others improve their code.

How do you write unit tests for code that processes large genomic files?

What they are checking: Whether they use small fixtures and test edge cases rather than skipping tests for data-heavy code.

Tell me about a time you compiled a program from source or used Linux pipes to solve a problem.

What they are checking: Whether their Linux skills are real and practical, since the posting asks for intermediate to advanced use.

How do you document your work so someone else can maintain it?

What they are checking: Whether they treat documentation as part of the job rather than an afterthought.

Practice this interview out loud.

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The full job description

As published by Tempus AI.

Compensation: Pay Range: $90,000 - $140,000 USD 

 Essential Functions: • Drive technical solutions to problems, including end-to-end process flow from ideation to release, and estimating time and complexity • Design and develop custom software according to ticket specifications • Act as a role model for the team, settings standards for excellence and mentoring junior engineers • Provide clear and consistent feedback on code reviews • Meet with clients, partners, product owners, or other stakeholders to understand and clarify workflows and requirements • Highlight blockers or issues arising during development to resolve in a timely manner • Monitor process and log information, troubleshooting issues as needed • Other duties as assigned. Qualifications: • Bachelor's degree (+ at least 5 years work experience), Master’s degree (+ at least 2 years work experience), or PhD degree in Bioinformatics, Computer Science, or a related field • Proficient in Python coding • Intermediate-to-advanced experience working in Linux environments (e.g. compiling programs from source, performing text manipulations with pipes) • Intermediate-to-advanced experience in relational databases (e.g., MySQL, PostgreSQL, Microsoft SQL Server) • Proficiency with software engineering best practices, including git version control, unit testing, and documentation • Knowledge of next-generation sequencing technologies and standard bioinformatics data formats (e.g., FASTQ, BAM, VCF, GTF) • Excellent communication and interpersonal skills. Preferred: • Experience with cloud computing environment (AWS, Azure, Google Cloud) • Familiarity with Atlassian suite applications (Jira, Confluence, BitBucket) • Knowledge of clinical genetics databases (e.g., Clinvar, HGMD) and HGVS sequence variant nomenclatures • Prior experience in biology and/or an understanding of mutation analysis • Creating and developing Docker containers • Experience developing APIs • Experience with CI/CD (e.g. Bamboo, Jenkins, AWS Code Pipeline) 

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